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REFERENCE PROTEINS

Reference protein for sod's : 1isa
Reference protein for Fe dimers : 1isa
Reference protein for Mn dimers : 1d5n
Reference protein for Fe tetramers : 1ids
Reference protein for Mn tetramers : 1kkc

FINGERPRINT LIST

SOD
DimerTetramer
FeMn
Fe dimerMn dimer
Fe tetramerMn tetramer
non Fe dimer  non Mn dimer  non Fe tetramer

SOD FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Conservation    Interresidue distance (Å)  
L 7 A7 1isa 93.0 -
L 14 A14 1isa 92.5 -
P 16 A16 1isa 89.8 -
H A26 A26 1isa 100.0 -
H 30 A30 1isa 97.6 -
H 31 A31 1isa 95.2 -
Y 34 A34 1isa 98.1 -
N 39 A39 1isa 93.6 -
H A73 A73 1isa 100.0 -
W 77 A77 1isa 94.6 -
I 96 A96 1isa 90.3 -
G 101 A101 1isa 94.9 -
G 119 A119 1isa 96.2 -
S 120 A120 1isa 94.1 -
G 121 A121 1isa 96.8 -
W 122 A122 1isa 95.4 -
L 125 A125 1isa 94.1 -
L 133 A133 1isa 92.0 -
P 151 A151 1isa 93.3 -
D A156 A156 1isa 100.0 -
W 158 A158 1isa 96.5 -
E 159 A159 1isa 100.0 -
H 160 A160 1isa 100.0 -
A 161 A161 1isa 94.1 -
Y 162 A162 1isa92.0 -
Y 163 A163 1isa98.4 -
N 168 A168 1isa 94.4 -
Y 173 A173 1isa 89.5 -
W 183 A183 1isa 97.9 -
H-H26-30 A26-A30 1d5n 97.6 5.60
H-H26-31 A26-A31 1isa 95.2 7.72
H-H26-73 Y40-Y88 1kkc 100.0 5.16
H-W26-77 A26-A77 1isa 94.6 5.76
H-D26-156 A26-A156 1isa 100.0 5.25
H-H26-160 A26-A160 1isa 100.0 4.72
H-A26-161 Y40-Y179 1kkc 94.1 4.71
H-Y30-34 A30-A34 1isa 97.3 6.76
H-H30-73 A30-A73 1isa 97.6 7.62
H-W30-158 A30-A169 1d5n 95.4 7.82
H-E30-159 A30-B170 1d5n 97.6 6.33
H-H30-160 Y44-Y178 1kkc 97.6 3.84
H-Y30-163 Y44-X181 1kkc 97.3 6.09
H-N30-168 A30-B179 1d5n 93.8 5.17
H-Y31-34 A31-A34 1d5n 94.4 6.73
H-H31-73 A31-A73 1isa 95.2 4.82
H-W31-77 Y45-Y92 1kkc 92.8 5.53
Y-H 34-73 A34-A81 1d5n 98.1 5.34
Y-W 34-158 A36-A162 1ids 95.4 6.82
Y-H 34-160 Y48-Y178 1kkc 98.1 7.48
H-WA73-77 A81-A85 1d5n 94.6 5.94
H-W73-122 Y88-Y141 1kkc 95.4 5.83
H-D73-156 A73-A156 1isa 100.0 5.34
H-W73-158 A73-A158 1isa 96.5 7.50
H-H73-160 A73-A160 1isa 100.0 6.69
G-S119-120 A125-B126 1d5n 92.2 3.75
G-G119-121 A119-A121 1isa 93.3 6.53
G-W119-158 A125-B169 1d5n 93.8 5.05
G-E119-159 A119-A159 1isa 96.2 6.96
S-G120-121 A126-A127 1d5n 91.2 5.17
S-W120-158 Y139-Y176 1kkc 92.8 3.45
S-E120-159 Y139-X177 1kkc 94.1 6.19
S-H120-160 Y139-Y178 1kkc 94.1 7.51
G-W121-122 A121-A122 1isa 92.2 5.39
G-D121-156 A121-A156 1isa 96.8 6.87
G-W121-158 A121-A158 1isa 93.3 5.49
W-D122-156 Y141-Y174 1kkc 95.4 3.97
W-W122-158 A122-A158 1isa 92.0 6.54
W-A122-161 A125-A165 1ids 89.5 7.82
D-W156-158 Y174-Y176 1kkc 96.5 5.87
D-H156-160 A156-A160 1isa 100.0 5.56
D-A156-161 A160-A165 1ids 94.1 3.78
D-Y156-173 A156-A173 1isa 89.5 7.46
W-E158-159 Y176-X177 1kkc 96.5 5.92
W-H158-160 Y176-Y178 1kkc 96.5 5.07
W-A158-161 Y176-Y179 1kkc 91.2 7.67
E-H159-160 A170-B171 1d5n 100.0 4.56
E-Y159-162 A170-A173 1d5n 92.0 5.70
E-Y159-163 A170-A174 1d5n 98.4 5.32
H-A160-161 A171-A172 1d5n 94.1 4.98
H-Y160-163 A171-B174 1d5n 98.4 6.14
Y-Y162-163 Y180-Y181 1kkc 90.6 6.44
Y-N163-168 Y181-Y186 1kkc 94.1 6.54
List of fingerprints | SODa Home Page

DIMER FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Specificity     %Nonspecificity    Interresidue distance (Å)  
T 22 A22 1isa 88.0 1.4 -
ILV 52 A52 1isa 91.0 2.9 -
N 65 A65 1isa 97.9 0.0 -
F 118 A118 1isa 98.3 0.9 -
P 144 A144 1isa 98.3 1.4 -
T-H 22-26 A22-A26 1d5n 88.0 1.4 6.32
T-A 22-161 A22-A172 1d5n 82.9 1.4 6.51
T-Y 22-163 A22-B174 1d5n 87.6 0.7 7.22
Y-F34-118 A34-B124 1d5n 97.4 0.0 6.54
N-N 65-66 A73-A74 1d5n 82.1 0.0 5.92
N-F 65-A118 A73-B124 1d5n 97.0 0.0 3.57
N-G 65-119 A73-B125 1d5n 96.2 0.0 7.89
N-N 65-140 A73-A145 1d5n 83.3 0.0 6.56
N-F 66-118 A74-B124 1d5n 82.1 0.0 6.08
N-P 72-144 A72-A144 1isa 96.6 1.4 7.77
F-G 118-119 A118-A119 1isa 96.6 0.0 4.77
F-S 118-120 A118-B120 1isa 95.7 0.0 7.75
F-N 118-140 A118-B140 1isa 83.8 0.0 5.44
F-W 118-158 A118-B158 1isa 97.9 0.0 6.65
W-P 124-144 A124-A144 1isa 94.9 1.4 3.98
T-P 138-144 A143-A149 1d5n 86.3 0.7 5.45
P-ILV 144-145 A149-A150 1d5n 94.0 0.7 5.65
P-P 144-151 A144-A151 1isa 91.9 1.4 4.55
List of fingerprints | SODa Home Page

TETRAMER FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Specificity     %Nonspecificity    Interresidue distance (Å)  
I 22 A22 1isa 84.2 0.9 -
F 65 A65 1isa 91.4 0.4 -
N 79 A79 1isa 83.5 0.9 -
Q 165 A165 1isa 82.7 2.1 -
P-Q 16-165 Y30-Y183 1kkc 82.0 2.1 7.54
ILV-ILV 18-22 Y32-Y36 1kkc 90.6 1.3 5.53
I-H 22-26 A24-A28 1ids 84.2 0.9 6.70
I-A22-161 Y36-Y179 1kkc 84.2 0.9 6.48
I-Y22-163 A24-B167 1ids 84.2 0.9 7.65
I-L 22-164 A24-A168 1ids 83.5 0.4 5.46
I-Q 22-165 A24-A169 1ids 82.0 0.4 5.94
I-Y22-166 Y36-Y184 1kkc 83.5 0.9 8.00
ILV-WFY22-173 A24-A177 1ids 91.4 1.3 7.97
Y-F 34-65 Y48-Y80 1kkc 91.4 0.4 5.76
F-G 65-69 A68-A72 1ids 90.6 0.4 6.25
F-G 65-119 A68-B122 1ids 88.5 0.4 6.24
F-W 65-158 A68-A162 1ids 86.3 0.4 7.51
Q-Y165-166 A169-A170 1ids 82.0 2.1 4.06
List of fingerprints | SODa Home Page

Fe FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Specificity     %Nonspecificity    Interresidue distance (Å)  
D 165 A165 1isa 87.9 0.5 -
S-D 19-165 A19-A165 1isa 80.3 0.5 3.63
List of fingerprints | SODa Home Page

Mn FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Specificity     %Nonspecificity    Interresidue distance (Å)  
M 23 A23 1isa 91.3 5.7 -
G 68 A68 1isa 99.5 8.9 -
Q 141 A141 1isa 99.0 1.3 -
D 142 A142 1isa 91.8 11.5 -
V 180 A180 1isa 83.6 17.8 -
L-M 7-23 Y21-Y37 1kkc 90.3 5.7 5.79
Y-M 9-23 A9-A23 1d5n 90.8 5.1 6.50
A-M 13-23 A13-A23 1d5n 86.7 5.1 7.67
L-M 14-23 Y28-Y37 1kkc 90.3 4.5 5.13
L-V 14-180 A14-A191 1d5n 82.1 17.8 4.41
E-KRQN 15-165 A15-A176 1d5n 90.8 9.6 7.52
M-H 23-26 Y37-Y40 1kkc 91.3 5.7 6.93
M-H 23-27 Y37-Y41 1kkc 81.0 5.1 7.63
M-W 23-77 Y37-Y92 1kkc 91.3 5.1 6.56
Y-G 34-68 A34-A76 1d5n 99.5 7.6 7.47
Y-Q 34-141 Y48-Y161 1kkc 98.5 0.6 4.62
N-G 66-68 A74-A76 1d5n 81.0 6.4 7.48
N-G 66-69 A74-A77 1d5n 80.5 16.6 6.65
N-Q 66-141 A74-A146 1d5n 80.0 1.3 8.00
G-G 68-69 Y83-Y84 1kkc 99.0 4.5 3.77
G-H 68-70 A76-A78 1d5n 90.8 2.5 7.83
G-N 68-72 Y83-Y87 1kkc 97.4 5.1 4.85
G-Q 68-141 A76-A146 1d5n 98.5 1.3 5.56
G-D 68-142 Y83-Y162 1kkc 91.3 1.9 7.09
G-H 69-70 A77-A78 1d5n 90.8 18.5 6.90
G-N 69-72 A77-A80 1d5n 97.4 3.8 4.87
G-Q 69-141 A77-A146 1d5n 98.5 1.3 3.49
N-Q 72-141 A80-A146 1d5n 96.9 1.3 5.06
N-D 72-142 Y87-Y162 1kkc 89.7 7.0 7.95
H-Q 73-141 Y88-Y161 1kkc 99.0 1.3 5.62
G-Q 119-141 Y138-X161 1kkc 97.9 1.3 7.46
S-Q 120-141 Y139-Y161 1kkc 97.9 1.3 7.42
G-Q 121-141 A127-A146 1d5n 98.5 1.3 7.08
W-Q 122-141 Y141-Y161 1kkc 91.8 1.3 5.75
N-Q 140-141 Y160-Y161 1kkc 88.7 1.3 6.86
N-D 140-142 A145-A147 1d5n 88.2 8.9 6.09
Q-D 141-142 A146-A147 1d5n 91.8 1.3 7.79
Q-D 141-156 Y161-Y174 1kkc 99.0 1.3 6.98
Q-W 141-158 Y161-Y176 1kkc 99.0 1.3 4.70
Q-H 141-160 Y161-Y178 1kkc 99.0 1.3 7.85
List of fingerprints | SODa Home Page

Fe DIMER FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Specificity     %Nonspecificity    Interresidue distance (Å)  
F 64 A64 1isa 95.7 0.0 -
A 68 A68 1isa 93.2 0.0 -
Q 69 A69 1isa 98.3 0.0 -
F 75 A75 1isa 93.2 0.0 -
A 141 A141 1isa 93.2 0.0 -
Y-Q 34-69 A34-A69 1isa 96.6 0.0 4.18
Y-A 34-141 A34-A141 1isa 91.5 0.0 7.51
L-A 38-67 A38-A67 1isa 88.9 2.1 4.44
L-A 52-67 A52-A67 1isa 82.9 0.0 5.38
ILV-F 56-64 A56-A64 1isa 92.3 0.0 5.97
ILV-A 56-68 A56-A68 1isa 90.6 0.0 4.54
F-N 64-65 A64-A65 1isa 93.2 0.0 5.84
F-A 64-67 A64-A67 1isa 92.3 0.0 6.49
F-A 64-68 A64-A68 1isa 89.7 0.0 4.37
F-A 64-141 A64-A141 1isa 89.7 0.0 5.49
N-A 65-68 A65-A68 1isa 90.6 0.0 6.94
N-Q 65-69 A65-A69 1isa 95.7 0.0 7.30
N-A 65-141 A65-A141 1isa 90.6 0.0 4.63
N-Q 66-69 A66-A69 1isa 82.9 0.0 7.56
A-A 67-68 A67-A68 1isa 89.7 0.0 5.23
A-Q 68-69 A68-A69 1isa 92.3 0.0 5.76
A-WFY 68-71 A68-A71 1isa 92.3 0.0 7.63
A-N 68-72 A68-A72 1isa 93.2 0.0 4.84
A-A 68-141 A68-A141 1isa 90.6 0.0 4.02
Q-N 69-72 A69-A72 1isa 98.3 0.0 5.25
Q-H 69-73 A69-A73 1isa 98.3 0.0 5.14
Q-F 69-118 A69-B118 1isa 96.6 0.0 6.35
Q-W 69-122 A69-A122 1isa 95.7 0.0 5.72
Q-A 69-141 A69-A141 1isa 92.3 0.0 4.13
Q-D 69-156 A69-A156 1isa 98.3 0.0 7.41
Q-W 69-158 A69-A158 1isa 97.4 0.0 5.46
WFY-F 71-75 A71-A75 1isa 92.3 0.0 5.71
N-F 72-75 A72-A75 1isa 93.2 0.0 7.78
N-A 72-141 A72-A141 1isa 93.2 0.0 5.98
F-W 75-124 A75-A124 1isa 89.7 0.0 6.82
F-P 75-151 A75-A151 1isa 83.8 0.0 5.42
F-L 75-153 A75-A153 1isa 83.8 0.0 7.74
F-A 118-141 A118-B141 1isa 91.5 0.0 5.54
G-A 121-141 A121-A141 1isa 83.8 0.0 7.94
W-A 122-141 A122-A141 1isa 90.6 0.0 7.32
T-A 138-141 A138-A141 1isa 82.9 0.0 7.99
A-W 141-158 A141-A158 1isa 92.3 0.0 7.26
List of fingerprints | SODa Home Page

Mn DIMER FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Specificity     %Nonspecificity    Interresidue distance (Å)  
D 19 A19 1isa 99.0 0.0 -
R 64 A64 1isa 83.2 11.7 -
S 137 A137 1isa 87.1 1.1 -
E-D 15-19 A15-A19 1d5n 95.0 0.0 6.64
D-T 19-22 A19-A22 1d5n 99.0 0.0 3.81
D-M 19-23 A19-A23 1d5n 93.1 0.0 7.18
D-L 19-164 A19-A175 1d5n 87.1 0.0 5.77
D-KRQN 19-165 A19-A176 1d5n 90.1 0.0 4.86
D-Y 19-166 A19-A177 1d5n 85.1 0.0 7.28
T-M 22-23 A22-A23 1d5n 93.1 0.0 6.25
T-ILV 22-25 A22-A25 1d5n 97.0 0.0 6.15
T-KRQN 22-165 A22-A176 1d5n 90.1 0.0 7.85
R-N 64-65 A72-A73 1d5n 82.2 0.0 5.79
R-N 64-140 A72-A145 1d5n 81.2 10.6 7.92
R-D 64-142 A72-A147 1d5n 82.2 11.7 4.26
N-G 65-68 A73-A76 1d5n 98.0 0.0 7.51
N-Q 65-141 A73-A146 1d5n 97.0 0.0 7.21
N-D 65-142 A73-A147 1d5n 94.1 0.0 7.28
G-F 69-118 A77-B124 1d5n 98.0 0.0 7.67
A-S 113-137 A119-A142 1d5n 80.2 0.0 5.10
F-Q 118-141 A124-B1461d5n 97.0 0.0 6.08
G-S 121-137 A127-A142 1d5n 87.1 1.1 6.77
S-V 137-157 A142-A168 1d5n 84.2 0.0 7.63
List of fingerprints | SODa Home Page

Fe TETRAMER FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Specificity     %Nonspecificity    Interresidue distance (Å)  
L 72 A72 1isa 87.5 0.0 -
H 141 A141 1isa 97.5 0.0 -
Y-H 34-141 A36-A145 1ids 90.0 0.0 4.95
G-L 69-72 A72-A75 1ids 80.0 0.0 5.01
G-H 69-141 A72-A145 1ids 90.0 0.0 3.55
L-H 72-73 A75-A76 1ids 87.5 0.0 6.41
L-W 72-122 A75-A125 1ids 87.5 0.0 4.24
L-H 72-141 A75-A145 1ids 87.5 0.0 5.30
L-D 72-156 A75-A160 1ids 87.5 0.0 7.86
H-H 73-141 A76-A145 1ids 97.5 0.0 6.13
G-H 121-141 A124-A145 1ids 97.5 0.0 7.22
W-H 122-141 A125-A145 1ids 97.5 0.0 5.68
H-D 141-156 A145-A160 1ids 97.5 0.0 7.45
H-WFY 141-158 A145-A162 1ids 97.5 0.0 4.67
List of fingerprints | SODa Home Page

Mn TETRAMER FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Specificity     %Nonspecificity    Interresidue distance (Å)  
P 143 A143 1isa 80.9 0.0 -
V 169 A169 1isa 80.9 20.0 -
I-M 22-23 Y36-Y37 1kkc 88.3 17.5 6.37
F-G 65-68 Y80-Y83 1kkc 98.9 15.0 7.47
F-Q 65-141 Y80-Y161 1kkc 97.9 2.5 5.48
N-P 72-143 Y87-Y163 1kkc 80.9 0.0 5.25
F-N 76-79 Y91-Y94 1kkc 84.0 20.0 5.89
N-L 79-80 Y94-Y95 1kkc 92.6 17.5 5.44
D-P 142-143 Y162-Y163 1kkc 80.9 0.0 5.89
N-V 168-169 Y186-Y187 1kkc 80.9 20.0 6.18
List of fingerprints SODa Home Page

NON Fe DIMER FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Specificity     %Nonspecificity    Interresidue distance (Å)  
G 69 A69 1isa 98.9 0.9 -
H-G 31-69 Y45-Y84 1kkc 97.9 0.9 6.88
Y-G 34-69 A34-A77 1d5n 97.9 0.0 4.04
G-H 69-73 Y84-Y88 1kkc 98.9 0.9 5.06
G-W 69-122 A72-A125 1ids 98.9 0.9 7.19
G-WFY 69-158 A72-A162 1ids 98.9 0.9 7.79
List of fingerprints | SODa Home Page

NON Mn DIMER FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Specificity     %Nonspecificity    Interresidue distance (Å)  
insertion 59F A59F 1isa 98.9 16.8 -
insertion 59G A59G 1isa 98.9 18.8 -
List of fingerprints | SODa Home Page

NON Fe TETRAMER FINGERPRINT

  Motif    Position in 1isa    Position in reference protein  %Specificity     %Nonspecificity    Interresidue distance (Å)  
N 72 A72 1isa 100.0 12.5 -
W 124 A124 1isa 84.0 2.5 -
N-H 72-73 A80-A81 1d5n 100.0 12.5 6.33
N-W 72-122 Y87-Y141 1kkc 100.0 12.5 4.21
N-W 72-124 Y87-Y143 1kkc 84.0 2.5 5.57
N-D 72-156 Y87-Y174 1kkc 100.0 12.5 7.71
W-W 122-124 Y141-Y143 1kkc 84.0 2.5 5.49
W-P 124-151 A130-A162 1d5n 83.0 2.5 5.52
List of fingerprints | SODa Home Page